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Pumpkin Baked Oatmeal Cups

Published:September 8, 2025 By Lila Category:

Pumpkin baked oatmeal cups are the ultimate grab-and-go breakfast solution that brings cozy fall flavors to your busy mornings. Forget spending precious morning minutes cooking breakfast – these healthy pumpkin baked oatmeal cups can be made ahead and enjoyed all week! As a mom of three who values both nutrition and convenience, I’ve perfected this recipe through countless Sunday meal preps. These breakfast cupcakes combine the warm pumpkin spice, hearty oats, and natural sweetness to create breakfast magic that even picky eaters will love. Whether you call them pumpkin oatmeal muffin cups or simply your new favorite morning fuel, they’re about to become a staple in your weekly routine.

Pumpkin baked oatmeal cup topped with cranberries, pecans, and maple glaze

Table of Contents

Why You’ll Love These Pumpkin Baked Oatmeal Cups

  • Quick and convenient – Make once and enjoy breakfast for a full week (just 30 minutes of active prep time!)
  • Perfectly portable – Grab these pumpkin oatmeal cupcakes as you head out the door for a nutritious breakfast on busy mornings
  • Customizable – The base recipe is gluten-free and can easily become vegan or accommodate various dietary needs
  • Kid-approved – These breakfast cupcakes taste indulgent but pack serious nutrition (my secret? The maple syrup brings out the natural sweetness of the pumpkin)
  • Budget-friendly – Using pantry staples and seasonal pumpkin makes these approximately $0.50 per serving

Pumpkin Baked Oatmeal Cups Ingredients

  • 2 cups old-fashioned rolled oats (use certified gluten-free if needed)
  • 1 teaspoon baking powder
  • 2½ teaspoons pumpkin pie spice (or make your own with cinnamon, nutmeg, ginger, and cloves)
  • ¼ teaspoon salt
  • 1 cup pure pumpkin puree (not pumpkin pie filling)
  • 1 cup milk (dairy or plant-based work equally well)
  • ¼ cup pure maple syrup (honey works too)
  • 2 large eggs, lightly beaten (or 2 flax eggs for vegan version)
  • 1 teaspoon vanilla extract
  • ⅓ cup mix-ins of choice (chocolate chips, chopped nuts, or dried cranberries)

How to Make Pumpkin Baked Oatmeal Cups

Pumpkin baked oatmeal batter and filled muffin tin side-by-side

Step 1: Prep Your Kitchen

Preheat your oven to 350°F (175°C) and line a 12-cup muffin tin with silicone liners or paper liners lightly sprayed with cooking spray. The silicone liners are my personal preference as these healthy pumpkin baked oatmeal cups release perfectly every time.

Step 2: Mix Dry Ingredients

In a large bowl, combine the rolled oats, baking powder, pumpkin pie spice, and salt. Whisk everything together until evenly distributed. This ensures your pumpkin oatmeal muffin cups will have consistent flavor in every bite.

Step 3: Combine Wet Ingredients

In a separate bowl, whisk together the pumpkin puree, milk, maple syrup, beaten eggs, and vanilla extract until smooth. The mixture should have a beautiful orange hue and smell wonderfully of fall spices.

Step 4: Create Your Batter

Pour the wet ingredients into the dry ingredients and stir until just combined. Avoid over-mixing which can make your baked oatmeal cups dense. Gently fold in your chosen mix-ins (chocolate chips work wonderfully with pumpkin!).

Step 5: Fill and Bake

Divide the batter evenly among the prepared muffin cups, filling each about ¾ full. Bake for 22-25 minutes or until the tops are set and a toothpick inserted in the center comes out clean. They should be golden brown around the edges.

Step 6: Cool and Enjoy

Allow the pumpkin oatmeal cups to cool in the muffin tin for 10 minutes before transferring to a wire rack to cool completely. This cooling time helps them set up properly and prevents them from falling apart.

Pro Tips & Easy Variations

  • Make them protein-packed: Add 2-3 tablespoons of protein powder to the dry ingredients for an extra protein boost.
  • Create a streusel topping: Mix 2 tablespoons each of oats, chopped nuts, brown sugar, and 1 tablespoon melted butter; sprinkle on top before baking for a delicious crunch.
  • Try different spice blends: Swap the pumpkin pie spice for chai spice mix or apple pie spice for a flavor twist.
  • Make them sweeter: For those transitioning to healthier eating, add an extra tablespoon of maple syrup or fold in extra chocolate chips.
  • Go fully vegan: Use plant milk, flax eggs (2 Tbsp ground flaxseed + 5 Tbsp water), and ensure your chocolate chips are dairy-free.

How to Serve and Enjoy Your Pumpkin Oatmeal Cups

  • Warm them slightly and top with a dollop of Greek yogurt and a drizzle of maple syrup
  • Pair with fresh fruit and a cup of coffee for a complete breakfast
  • Crumble over a smoothie bowl for added texture and nutrients
  • Pack in lunchboxes as a healthy snack alternative to processed treats
  • Serve as a healthier dessert option topped with a small scoop of vanilla ice cream for special occasions

Common Mistakes to Avoid

  • Using pumpkin pie filling instead of puree: Pie filling has added sugars and spices that will throw off the recipe. Pure pumpkin puree gives you control over sweetness and flavors.
  • Overmixing the batter: This develops gluten (even with oats) and results in tough cups. Mix just until combined for the perfect texture.
  • Underbaking: Since these healthy cupcakes contain no oil, proper baking ensures they’re not gummy in the center. Look for that golden edge and set center.
  • Skipping the liners: These baked oatmeal cups stick easily to the pan without proper lining, which can result in crumbling when removed.

Storing for Later & Meal Prep

  • Refrigeration: Store cooled pumpkin oatmeal cups in an airtight container in the refrigerator for up to 5 days. They make the perfect grab-and-go breakfast all week!
  • Freezing: Wrap individual cups in plastic wrap and store in a freezer bag for up to 3 months. Label with the date to keep track.
  • Reheating: From refrigerated, microwave for 20-30 seconds. From frozen, microwave for 45-60 seconds or until warmed through.
  • Meal prep strategy: Make a double batch on Sunday – enjoy some fresh, refrigerate enough for the week, and freeze the rest for busy weeks ahead.

Let’s Make Pumpkin Oatmeal Cupcakes!

These pumpkin baked oatmeal cups have become a staple in my home, especially during busy fall mornings. They’re the perfect balance of wholesome ingredients and comforting flavors, proving that healthy breakfast options can be delicious too! Whether you’re meal prepping for the week ahead or looking for nutritious grab-and-go options, these versatile little cups will become your new favorite. Give them a try this weekend and let me know in the comments how they turned out or if you added your own creative twist!

Close-up of baked pumpkin oatmeal cups with oats, chocolate chips, and pecans

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Frequently Asked Questions

Can I make these pumpkin oatmeal cups without eggs?

Absolutely! Replace the eggs with flax eggs (2 tablespoons ground flaxseed mixed with 5 tablespoons water, let sit for 5 minutes). The texture will be slightly different but still delicious.

Are these baked oatmeal cups actually gluten-free?

Yes, as long as you use certified gluten-free oats. Oats are naturally gluten-free, but cross-contamination can occur during processing, so certified GF oats ensure they’re safe for those with celiac disease or gluten sensitivity.

Can I use steel-cut oats instead of rolled oats?

I don’t recommend it for this recipe. Steel-cut oats require more liquid and longer cooking time. Stick with old-fashioned rolled oats for the best texture in your pumpkin oatmeal cups.

How can I make these pumpkin oatmeal cupcakes sweeter without adding sugar?

Try adding more natural sweetness with mashed ripe banana (replace half the pumpkin), chopped dates, or extra cinnamon which enhances perceived sweetness. You can also add a few drops of liquid stevia.

Can I use homemade pumpkin puree instead of canned?

Definitely! Just make sure to drain excess liquid from your homemade puree, as it tends to be wetter than canned. Strain it through a fine-mesh sieve or cheesecloth before measuring.

Pumpkin baked oatmeal cups topped with cranberries, pecans, and maple glaze

Pumpkin Baked Oatmeal Cups

Lila
These pumpkin baked oatmeal cups are the ultimate grab-and-go breakfast solution. Packed with cozy fall flavors, hearty oats, and natural sweetness, they’re meal-prep friendly, kid-approved, and customizable to fit any diet. Make a batch on Sunday and enjoy nourishing breakfasts all week!
Prep Time 10 minutes
Cook Time 25 minutes
Total Time 35 minutes
Course Breakfast, Snack
Cuisine American
Servings 12 cups
Calories 120 kcal

Equipment

  • 12-cup muffin tin
  • silicone or paper liners
  • 2 mixing bowls
  • Whisk
  • spoon or spatula
  • wire cooling rack

Ingredients
  

  • 2 cups old-fashioned rolled oats (use certified gluten-free if needed)
  • 1 tsp baking powder
  • 2 1/2 tsp pumpkin pie spice
  • 1/4 tsp salt
  • 1 cup pure pumpkin puree (not pumpkin pie filling)
  • 1 cup milk (dairy or plant-based)
  • 1/4 cup pure maple syrup (or honey)
  • 2 large eggs, lightly beaten (or 2 flax eggs for vegan version)
  • 1 tsp vanilla extract
  • 1/3 cup mix-ins of choice (chocolate chips, chopped nuts, or dried cranberries)

Instructions
 

  • Preheat oven to 350°F (175°C) and line a 12-cup muffin tin with silicone or paper liners, lightly greased.
  • In a large bowl, whisk together oats, baking powder, pumpkin pie spice, and salt until evenly combined.
  • In another bowl, whisk pumpkin puree, milk, maple syrup, eggs, and vanilla until smooth.
  • Pour wet ingredients into dry ingredients and stir until just combined. Gently fold in mix-ins.
  • Divide batter evenly among muffin cups, filling each about ¾ full. Bake 22–25 minutes until tops are set and toothpick comes out clean.
  • Cool 10 minutes in the tin, then transfer to a wire rack to cool completely before serving.

Notes

For extra protein, stir in a few tablespoons of protein powder. Try a streusel topping of oats, nuts, and brown sugar for crunch, or swap pumpkin spice with chai spice for variation. Store in the fridge up to 5 days or freeze for up to 3 months for the perfect meal prep breakfast.

Nutrition

Calories: 120kcalCarbohydrates: 20gProtein: 4gFat: 3gSaturated Fat: 1gPolyunsaturated Fat: 0.5gMonounsaturated Fat: 1gCholesterol: 25mgSodium: 95mgPotassium: 150mgFiber: 3gSugar: 6gVitamin A: 3500IUVitamin C: 2mgCalcium: 60mgIron: 1.5mg
Keyword fall breakfast meal prep, healthy grab-and-go breakfast, pumpkin baked oatmeal cups, pumpkin oatmeal muffins
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